rs49501418 SNP Detail

Summary

• ID
  rs49501418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19526989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATTACAT GTCTAAGTAC
  AGTGACATCG TAATTCATGA CATTGGCCAC CATTGTATAT TCTATAATTA GAAAGAACTT
  CTCAGTGCCA GTGTCCCCTC AGTGAAAAGA GACCAGCTTG TGTACTGTCA TGTAGAATAA
  TGACTGCAGG TGCACAAACT CCTTAACATA AAATCTGGCC TTCAAAATGT TTTCCAGTGT
  Y
  TTAAGTTCAC AATATTTCCT GCTCTGTAGC TTGACTCTTT ACATGGACGC TTACATTAAC
  TACTTTATTA CTAATGTTTT CAATTTGTGT AATTACATGA AGCATCACAG AAAGGTAATG
  TTCTGTAGTA GAGCCAAACT TACCTCCTCC CCCCCTCAAG AGAAAAGGGG GTCATTATGA
  ATATGTGTTT ATTAAATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52626614	NES15515226	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49501418					SNP	T	T	C	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626614	NES15515226	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19526989 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1739 bp upstream
Trgj4	T cell receptor gamma joining 4	607 bp downstream
Tssr118539	transcription start site region 118539	1121 bp downstream
Tssr118540	transcription start site region 118540	1048 bp downstream
Tssr118541	transcription start site region 118541	992 bp downstream
Tssr118542	transcription start site region 118542	914 bp downstream
Tssr118543	transcription start site region 118543	878 bp downstream
Tssr118544	transcription start site region 118544	858 bp downstream
Tssr118545	transcription start site region 118545	832 bp downstream
Tssr118546	transcription start site region 118546	750 bp downstream
Tssr118547	transcription start site region 118547	677 bp downstream
Tssr118548	transcription start site region 118548	658 bp downstream
Tssr118549	transcription start site region 118549	80 bp downstream
Tssr118550	transcription start site region 118550	623 bp upstream
Tssr118551	transcription start site region 118551	1381 bp upstream
Tssr121588	transcription start site region 121588	1110 bp upstream
Tssr121589	transcription start site region 121589	439 bp downstream
Tssr121590	transcription start site region 121590	1505 bp downstream