rs49499130 SNP Detail

Summary

• ID
  rs49499130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144632430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAG GCTCTCTGCC CTCGACAAAG
  Y
  AGGGTAAGTG TGAGTTCCAG GACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147840363	ENSMUSSNP3152886	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321410731	CHEV_4_144495763	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49499130					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144632430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dhrs3	dehydrogenase/reductase 3			Intron
				Noncoding-Transcript-Variant
Rr604254	regulatory region 604254			1138 bp distal
Rr604255	regulatory region 604255			316 bp distal
Rr604256	regulatory region 604256			within coordinates
Rr604257	regulatory region 604257			1536 bp proximal
Tssr40174	transcription start site region 40174			1547 bp downstream
Tssr40175	transcription start site region 40175			1125 bp upstream
Tssr44469	transcription start site region 44469			1883 bp upstream