rs49498344 SNP Detail

Summary

• ID
  rs49498344
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141308053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTTCTG CAGTATCAGA
  AAAGTTGAGA ACCACTGCTC TAGAGAACCA GCCATGGTAT CTGCCACAGA GAGATAGTAA
  TGCCCACTTA ACAGACTGGA GCATAGATAT AAGACTATAA TACATAGGGA AGGTACTATA
  GTAACAGTGC ATCAAGAATC CCATGACTTT ATATTGTTAT TATCATTTTG TCACTTACAG
  K
  GGCCATCTTA TGCTTTTAAG AGAGAAGAGC CTTGAGCTTG GAGATGGGTC CAAAAAGTAT
  TCTAGTTGTC ACCCCAGCTG GAAGGCTTTC CTTGTTGCCT GACAAAATTT AGAAGCCGGA
  AGTAATCAAA ACCACCTCGA GTGGTGACTG AGGGATGAGG AAGGCCAGAC CCTGAAAGAA
  GTCGAATATA AATGGGATAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61091951	NES16600213	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49498344					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091951	NES16600213	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141308053 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586341	regulatory region 586341			646 bp distal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant