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rs49498103 SNP Detail
Summary
  • ID
    rs49498103
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:131592018 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TCTATTTTCT TTCCCCTCCT TTGAAGTGCT TATTCATCTT
    GATTTTGTTG CTTAGATATA AACGTTTCTC ACCACTAAAT ATTATGAGTA AAATAAATAC
    Y
    GCCTTTGATT TTTCCTTCTG TCTTAAACCA TTTGAAAAAT CAGAACACTT TTTATCGTCT
    TGCTGAGAAC TCAGGCTTGG TTTTTAGCAC ATAGTAAGT                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
ss135905985 ENSMUSSNP5624978 ENSEMBL ENSEMBL_Sanger f SNP T C
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
rs49498103 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:131592018 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm65547 predicted gene, 65547 1410 bp downstream
Rr585388 regulatory region 585388 327 bp proximal
Rr585389 regulatory region 585389 404 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory