rs49496379 SNP Detail

Summary

• ID
  rs49496379
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51356266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTGACA AAATATTTAT
  CCTCTTAATT ATATACCTTC TTGCCATTTT TATGTTTTTG GAAACATTCT CCTCCTCTGT
  GTGCAGAAAA CTCCAACCAG CAGCATAAAA ATGTAAAATA AGACTTAAAA TATATAGTCA
  CTTTTACTTT GTTTTCACAT TACTCTGCAC TACAATCCCA GATATCACAT GTGTCATACT
  W
  TCTCTTTTTC TGCTGAGGAA TGGAACAGAA ACTGAGTCTG TGAGTAAAAC TCCTCTGTGA
  AGAATCAGGA TGTCAGAGTT GCAGTGTGGA ATAGCACACA TAACACACAC ACACACATAC
  ACACACACAC ACATACATAC ACACAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52289277	NES15305184	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49496379					SNP	A	A	A	A	A	A	T	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289277	NES15305184	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51356266 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	442 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	491 bp upstream
Rr431273	regulatory region 431273	303 bp proximal
Tssr93232	transcription start site region 93232	66 bp upstream
Tssr93233	transcription start site region 93233	643 bp upstream
Tssr93234	transcription start site region 93234	669 bp upstream
Tssr93235	transcription start site region 93235	962 bp upstream
Tssr93236	transcription start site region 93236	1448 bp upstream
Tssr93237	transcription start site region 93237	1487 bp upstream
Tssr93238	transcription start site region 93238	1511 bp upstream
Tssr93239	transcription start site region 93239	1536 bp upstream
Tssr93240	transcription start site region 93240	1553 bp upstream
Tssr93241	transcription start site region 93241	1575 bp upstream
Tssr93242	transcription start site region 93242	1615 bp upstream
Tssr97553	transcription start site region 97553	264 bp downstream