rs49495449 SNP Detail

Summary

• ID
  rs49495449
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160798801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA TTATTGGAGA ATTTAGTCAG
  G
  ATTTAAATGT TAAAAACAAA AAAAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148151391	ENSMUSSNP19927	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320593599	CHEV_2_160782617	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49495449					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160798801 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd6	chromodomain helicase DNA binding protein 6			Intron
				Noncoding-Transcript-Variant
Rr569112	regulatory region 569112			1119 bp distal
Rr569113	regulatory region 569113			1333 bp distal
Rr569114	regulatory region 569114			539 bp proximal