rs49494517 SNP Detail

Summary

• ID
  rs49494517
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33973229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAGCAG AGGAGCGAAG
  AGACTGGAAG AGAATTTGGG CAGGCAGGTT CCCGAGGACT TTTCATCTAC ACTTACTAGC
  GCCCCCTGGT GGCGGCACAC AGCCGCTAAA CCCGCGTTTA CACAGGCTTC TGTTCTCAGA
  AGCTGCCCTT CCTTAGAAAT GCACTTAGGT ACGGTTCAGG ACAGGCCCGG AGCTCCCTCC
  W
  GACTCCCTGC CCCAGTTGCT CTAAATCTGT CAATAGAGAC TTATTGTCCT CCACCCCGCA
  TCAGTGTCTC TATCAGAATT CTTAACATTA AGTAACTGGG TTGGACAGGA TGATGATGGA
  CGCCATGACT TATCTGTCTG TCCTTGTCCT TCAGCCTGAC TGTTTTCACT CCTGCCTTCC
  TTCTTCCTTC TTTTCATTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134760363	ENSMUSSNP1077807	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49494517					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33973229 () rs orientation: forward

Symbol	Name	Function Class
Rr575083	regulatory region 575083	572 bp distal
Rr575084	regulatory region 575084	within coordinates
Rr575085	regulatory region 575085	104 bp distal