rs49493409 SNP Detail

Summary

• ID
  rs49493409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120805899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTA CCCTGAAATG TTTTTGTCAG
  Y
  CTAACCTCCA TTGTTATCTC TGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147374559	ENSMUSSNP3318388	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320480945	CHEV_2_120801154	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49493409					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120805899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	1524 bp proximal
Gm74862	predicted gene, 74862	1769 bp downstream
Rr563749	regulatory region 563749	563 bp proximal
Rr563750	regulatory region 563750	786 bp proximal
Rr563751	regulatory region 563751	1097 bp proximal
Rr563752	regulatory region 563752	1109 bp proximal
Rr563753	regulatory region 563753	1619 bp proximal
Rr563754	regulatory region 563754	1625 bp proximal
Rr563755	regulatory region 563755	1691 bp proximal
Tmem62	transmembrane protein 62	1599 bp upstream
Tssr19722	transcription start site region 19722	1663 bp upstream
Tssr19723	transcription start site region 19723	1730 bp upstream
Tssr19724	transcription start site region 19724	1830 bp upstream