rs49492245 SNP Detail

Summary

• ID
  rs49492245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32243847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTTTCAG GGTTCTCAAA
  AATACCACAC AAGCCTGAGG CTCTCAGTCC CCTGCCACAG TTAGCAGATA GTCACAGGAC
  AGAGCACTGA GCACTAAGAT GGACTTCCCC AGCCCAGCTC TTTATCCTCT GTACAGGCAG
  CCTCTGTTTT TAATCAGAAA TACAGATTCT GAGAAAATGA CCATCTCTGC CTTAGAATAC
  Y
  ACCTGACCAT CTCTGTTCAG CGTGAGGAGT ATTCAGGATA CTCCCAGGAA AGGAAAAAGG
  AAAAGTACCC TCATTGTCAG CCTCCCCATC CTGTTACTTC CCACAAGCTC ACAAGAATAA
  CAGACATCCA CATTGCCAAG AAATAGACAT GCTTCTGCTG AGATTCTAGC TACTACTGCT
  GAGATTCTAG CTACTATCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60382917	NES15880778	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49492245					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60382917	NES15880778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32243847 () rs orientation: forward

Symbol	Name	Function Class
Kcnmb2	potassium large conductance calcium-activated channel, subfamily M, beta member 2	Intron
Rr574931	regulatory region 574931	879 bp distal
Rr574932	regulatory region 574932	956 bp distal
Rr574933	regulatory region 574933	520 bp distal
Rr574934	regulatory region 574934	333 bp proximal