rs49489802 SNP Detail

Summary

• ID
  rs49489802
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107161788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAGTAGA ATGAGCTTGT
  ATTTCTGATC TTCTTGCCTC TACTTCTAGA GTTTGAAGAT TATAGACACC TGACACCATG
  CCTGATTTGC TGAGCACTGT TTTGTTCTTA TTTCTGGATT GGGGATGAAA CCCAGAGTCT
  TGTGTGTGCT AGGCAAACTC TCTAGCCAGT AGTTTTTGAT ACAGTTCTCA TTATATACCC
  A
  AGGTTGGCTC TGAACGCCAA TCCTCCTGCC TCTGTTTCCC TAGTGCTAGG ACAGCAGGCG
  TTTGCCACCA CACCTGGAAA ACAGAACTCT TTTTAACTGA GAGAAGACAG TTAACAGACA
  CAAGTGAGTT CCATGAGCTG GCCCTGGGTC AGGTGGCTTC CAGGGAACTG CTCGTCAGAC
  TGTCTCCAGC AATTTGTTCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147177021	ENSMUSSNP4114638	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49489802					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107161788 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596967	regulatory region 596967			1194 bp distal
Rr596968	regulatory region 596968			744 bp distal