rs49488179 SNP Detail

Summary

• ID
  rs49488179
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121079015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTCACAT TTCCAAGGCC
  CTGCCTTTGA TCCTCAAAAA GGGAAAAACA CATTTTCTCA ATTCCAGATT TTCTGTCTTT
  TACCCAATAT GACCATTTCC CATTTAGGGA GAATTGGAAA TGCCTAATAA TAAATCTGAT
  TTTCTTCATT TTTTAAGTCT GTTTCTCTGC TCACTCTCAA CTGTTTTTCC AGCATTTGCA
  A
  TGCTTTGGAA TGCTGCCACT GTTTAGATTT CCGGCGACTG TCCTGTTCCA AGTACCTGAC
  CTACTTACCT ATGATCGACG TGTACAGGGC TGACTGCGGT CAGTCTGACA TCCACAGGAA
  TAGGGCTGAT TGCAGTCTAA CATCCACAGG GATAGGGCTG ACTGCAGTCT GACCCTTATT
  TTCTTCTCCT GGTTTCCGTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss135717540	ENSMUSSNP3618171	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49488179					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121079015 () rs orientation: forward

Symbol	Name	Function Class
Rr584034	regulatory region 584034	within coordinates
Rr584035	regulatory region 584035	1112 bp proximal
Rr584036	regulatory region 584036	1665 bp proximal
Rr584037	regulatory region 584037	1998 bp proximal