rs49486854 SNP Detail

Summary

• ID
  rs49486854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106642180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTGAGAT GGGAATCTCA TTCTGACCCC AGGCTGACCT
  CAAACTTACC ATATAGCCCA GGCTGGTAAG TGCTCTCCAC ATGCCAGTGT TGCAGACCCC
  R
  CCCACCATGC CAGCTGCGTT TACTTCTTTA ATCTTCACAC CGCCCTAATA GCTGGGTGTC
  CCATTCCCAT TTTACAGATG GGGAAGCAGA GGCTCAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147171774	ENSMUSSNP2978465	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321247207	CHEV_4_106457588	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49486854					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106642180 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	360 bp proximal