rs49482740 SNP Detail

Summary

• ID
  rs49482740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCAAGG AACCCTTTAA
  GAAATGTGAC ACCTCCTTAA GCATTTAAAA ACCCATTTCA GTCTGGACCT TCACTAGGGC
  AGCAGGAGAA TGGTCATATT TGTGCTTCTT GGGACGCTGG CTCCCCTTGG ACACCTTAAG
  CCTTGCAGGA GCTGAACCAG GCTAGAGAAG GGGTTGGCAG CGGTGGGCAG GAGGGGCCCC
  R
  GGCCGCTGGC CTGGGTGTGT GGGGGTCTTA CCGCGGCTTG CTGGAAGGCG CCCTTGGTAT
  AGGTGCCACC ACCGCGGTAG GTGATGGCCG GGATCTCGCG GCTGAGTAGC GCGCACTTGT
  GTTGGTGCGC GCGGCTGGTG GAGATGTAAT CCACGCGCGC CACCACGTTG TTCTTGGATG
  AGAAGGTGAC GATGGCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146390716	ENSMUSSNP2796575	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49482740					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205811 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			within coordinates
Rr592872	regulatory region 592872			775 bp proximal
Rr592873	regulatory region 592873			831 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			512 bp downstream
Tssr41871	transcription start site region 41871			537 bp downstream
Tssr41872	transcription start site region 41872			693 bp downstream
Tssr41873	transcription start site region 41873			722 bp downstream
Tssr41874	transcription start site region 41874			747 bp downstream
Tssr41875	transcription start site region 41875			767 bp downstream
Tssr41876	transcription start site region 41876			788 bp downstream
Tssr41877	transcription start site region 41877			828 bp downstream
Tssr41878	transcription start site region 41878			859 bp downstream
Tssr41879	transcription start site region 41879			875 bp downstream
Tssr41880	transcription start site region 41880			957 bp downstream