rs49480986 SNP Detail

Summary

• ID
  rs49480986
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135682435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTGAGA AAGTAGTGCA
  AGCCATCACA GAATTGCTCT GCTGCCTCAC GTTCCAGAGG TCAGGAGTGT TGGCTGCGTC
  TGAGGCCTCC AGAGAGCCAC GTATCCTGTA GTAACTAGGG ATGCGCGGTT AGCCTTGCTA
  TTGCTGGGTT TGTACGTGCC TCACTCCAGT GCCTGCCTCC ACCTCACGTG GCCTTTCATG
  K
  CTCAGTACTT CACACAGCCA TCTTTGAAGG ACACCAGTCA TTCTGGGTTA GGGATACTCT
  GCTCCGGTGT GGTCTAATTT ATCCAGCTAC ATTTTCAATG ACCCTGTTCC CAAGTAGGTA
  ACATGGTCTG GGGAACTAGG GACTGGGACG TCCACATGTT TTGTTTATTA TTATTTAATT
  TATTTACTTG TGTGATTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147554688	ENSMUSSNP5997361	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49480986					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135682435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr398602	regulatory region 398602			520 bp downstream
Rr602217	regulatory region 602217			1504 bp distal
Rr602218	regulatory region 602218			417 bp distal
Rr602219	regulatory region 602219			664 bp distal