rs49479368 SNP Detail

Summary

• ID
  rs49479368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127743417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATTTTT GAGCACGAAG
  ACTCTTTGTC TTGACTTCGT TTTTCTTCCC TGGATGGACC CTTCATGACA TCAACTCGGG
  AAAAAGGATC CTCTGAACTG GCTGAGCCCT CAGTGGGTTC CATAGTGACT GTCTTGCGTA
  GAACCTATAG GCCCGTGTTA AGTGTCTAGA TACGCACCTT TCTCTTAAAA CAGTTTGATT
  Y
  AGCAGGGGTC ACGAGGCCCT GAGGGCTGCA TTTTAATATG TGCTTTGGGT GTAGGGTACA
  GACCTCGTAC CTGAGAAATC CTAGTCTATG GGGTAAACTG TTCTTCCAAG CACAGACACT
  ACTCTAGGTG GCTGAAGTGG TCCCTAGAGC TCCATCCTCT GCACGATGTA CCTGCCTTTC
  TTCTCTAGGC ACCTTCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135875969	ENSMUSSNP718749	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320958559	CHEV_3_127652686	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49479368					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127743417 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	447 bp downstream
Rr584909	regulatory region 584909	1148 bp distal
Rr584910	regulatory region 584910	349 bp distal
Rr584911	regulatory region 584911	647 bp distal
Tssr31619	transcription start site region 31619	535 bp upstream