rs49477339 SNP Detail

Summary

• ID
  rs49477339
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129816231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGGATAC CTGGAGCTTG CTGGTCAGTG AGTCTAGCTG
  AATCGGGGAG CGCCAGTGTC AGTGGGAGAC CCTGTCTCCG GGAGTAAGGT GGAGAGTGAC
  T
  GAGGAAGACA CTGGAGTCCT CTCAGGATCC CACACACACT CAGATCCATG CGGATGCACA
  GAGGATCTTG AACATAGGAC ACAGTCATGT CTGCACTTT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147454276	ENSMUSSNP1236505	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49477339					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129816231 () rs orientation: forward

Symbol	Name	Function Class
Rr600382	regulatory region 600382	947 bp distal
Rr600383	regulatory region 600383	1101 bp proximal
Rr600384	regulatory region 600384	1724 bp proximal