rs49473560 SNP Detail

Summary

• ID
  rs49473560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106645705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGTTTGAT CCCCACCACT GCATGAAACG GTTGTGGTAT
  TATCCCAACA TTTGGAAGAT GGAGACAGGA GGATCAGAAA TTCAGGGTCC ATCCCAGCTA
  Y
  AAAGCAAGTT TAAGGCCAGC CTAGGCTACA TGAGACCCTG TCTCAAAAAG AAAAGAAAAC
  GATAGGAGAG GGGATATGAT GGAGGGAAAA GGTCCTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147171877	ENSMUSSNP903582	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321247242	CHEV_4_106461113	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49473560					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106645705 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	1683 bp distal
Rr596809	regulatory region 596809	244 bp distal
Rr596810	regulatory region 596810	934 bp distal
Rr596811	regulatory region 596811	1195 bp proximal
Rr596812	regulatory region 596812	1906 bp proximal