rs49472547 SNP Detail

Summary

• ID
  rs49472547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99565991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCGCGTG TGGCTTTGAC
  CTCAGGAGTG GTGGTGGTCT TTGTAGCTTT TTCCACGGAT TCTTTCTTCT TGGGAGAAGC
  CACTCTGGAC ACCTTGTCGG AGGATTCCTT CAAAGCTCCT GGTTTGGGGG AAGCTGCTAA
  AGGCTTGGAC TTCCCATCAC CCTTTTTGAC AGGTGAAGAG GACTTGGTCT TTGTGCCTGG
  Y
  TTCTTGGTCT TGGTCTTCTC CTTCAGGTCT TTTTTCAGAG CCTTGCCTAG GTTCTGATCA
  ACGGCCAAGG CGTCTGGGTC CACCATGGAC ACGTCGGGGT GGCGAGGAGA AGGGCTTCGG
  TCTTGCATGG GGGCTGGAGG TGGGTCCATG TGTTTGTATG TGACGGTTTT GTCTGTGGGG
  ATAGTTTCTG ACTCATCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52684844	NES15534657	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49472547					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684844	NES15534657	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99565991 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr4149	transcription start site region 4149	109 bp upstream
Tssr123696	transcription start site region 123696	408 bp downstream
Tssr123697	transcription start site region 123697	598 bp downstream
Tssr123698	transcription start site region 123698	729 bp downstream
Tssr123699	transcription start site region 123699	820 bp downstream
Tssr123700	transcription start site region 123700	845 bp downstream
Tssr123701	transcription start site region 123701	903 bp downstream
Tssr123702	transcription start site region 123702	923 bp downstream
Tssr123703	transcription start site region 123703	975 bp downstream
Tssr123704	transcription start site region 123704	1026 bp downstream
Tssr123705	transcription start site region 123705	1334 bp downstream
Tssr123706	transcription start site region 123706	1552 bp downstream
Tssr123707	transcription start site region 123707	1741 bp downstream
Tssr123708	transcription start site region 123708	1949 bp downstream