rs49470796 SNP Detail

Summary

• ID
  rs49470796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30172681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGCCCT CTTCTCATCA
  GACAACTGCA GTGCTAATAA CAGGCCCTGG ATCCAGGCCT GGTTCCAGAA TATTCCAAAA
  GGTCCAGAAG GTGACTCAAG GAAATAATGT GTCAGTCCTT TATAGTTAGA TAATTCACCC
  AAAACTGCCC AGCTTCTCTC CACACCATTT GCAGTAGCCC TGGCAGGCAA CACGGCAGCT
  R
  AACTCTTAGG TGGGATAGAG AAGAAAGCTG GGGCTCACTA AGTATTCATG GCATTCAGCA
  GTGAAACCTC CCATTTTTCA CTACCACTAT AGTCTTGTGA ACTACGTTGC ATTATTCTAA
  ATTAGAGGCC TGTACTACCA TTCCTAGACT TATAAAATCT GTTAACCAAT CAGGAAACAA
  AGGAAATGCA CATGGCGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134729154	ENSMUSSNP6779884	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49470796					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30172681 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			184 bp proximal