rs49469888 SNP Detail

Summary

• ID
  rs49469888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42028596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAGCAGAT GAGTGTCTGT TATATTAGCG GATGAAAATG
  CTGAATGGGT GTTTCAGCAT GTAGTAGAAA GTAGCTAGAA ATAGAATAAC TGGTTTGCTA
  R
  ACTTTTTTTT GTCATAAAGG GTTTTATAGT TAAAGAAAGG CATTGGTGGA AGGAAGTGAG
  GCACACAAGA GTTCTCAATA CAGTTCAACC TGCCTTCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60395661	NES15895189	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	G	G	G
ss135047767	ENSMUSSNP7084168	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49469888					SNP	A	G	A	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60395661	NES15895189	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42028596 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	396 bp proximal
Rr576015	regulatory region 576015	481 bp proximal