rs49468075 SNP Detail

Summary

• ID
  rs49468075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121664292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGCAATA TGGTTTTTTG
  TTTCTGTGAG TCACCTGGAG GAAGTGAAAT TCTATTCTGT ATGTTTTGCC TTGGAGAGAA
  TGTTATGAAC CAGGAACCAC GGACAAAGGC CAAGAAACAT GAGCATCACA GAGGGACTTC
  CACGCCGGCT GATATTGTTG GTGCTTGCCC TCTCCTGCTC AAAATGGTCT TCTCCACGTC
  Y
  GTGTCCAGGA CTATCATTTA TTATTTTTGC AATCACCCTC TAATCACACC AAGACTTTTT
  TTTTATTCAG AAGGTCAGAC ATTTTCATAA AAGTGTTAGA GAGCTGGGAG GTCTCTGTAT
  TTGCCCGTGT GGGCCACAGG AAGATGTTTT GGTAAGTGTA TGCTCAGCCA GGGGATGGTT
  ACCCTTAGGA TCCAGAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135730743	ENSMUSSNP4164442	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49468075					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121664292 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	1220 bp downstream
Rr584188	regulatory region 584188	619 bp distal
Rr584189	regulatory region 584189	145 bp proximal
Rr584190	regulatory region 584190	1185 bp proximal