rs49467396 SNP Detail

Summary

• ID
  rs49467396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119550174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGACACAG GGGTCTGCTG
  GCACTTAGGC CTGTGGGTAT CATACCCTAC ATAGCGACAT ATTCTTGCTT TGACCCTTCT
  TCAAAGACCT GGAGGGAGGC CAATGAGGAA GGCCTGGAGG AGGCCAATGA GGAAGGCCTG
  GGGGGAGGCC ACCTTTACCT TAGGTGCGAA GGCTATGAGG CTTGACGATG GAATGAAGAG
  R
  CAGGGATGAT CTCAGCCAAC CTGCAGTGAG CTCTCAGGGC CAGCTACCTT AAGGATCATG
  TGCATGCAGA CAGTCATGGA ATGACATGTA CAGTGCAATG GCAGTTACGC ATTTAGTAAC
  TATTGGCTTA CTGAATGGCA GTCAGTAGGA TCCCAATGCC AGATACCCTA TTAACTTTGC
  CTAACACAAA GACCACAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133591181	ENSMUSSNP2876475	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321928764	CHEV_6_119523231	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49467396					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119550174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			mRNA-UTR
				Noncoding-Transcript-Variant
Gm44317	predicted gene, 44317			within coordinates
Rr637716	regulatory region 637716			453 bp distal