rs49465445 SNP Detail

Summary

• ID
  rs49465445
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108807470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA ACAAAAAACA AAACAACAAC
  A
  ACAAAACCAA AGCCTTCCTA CTTTA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321894200	CHEV_6_108780503	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49465445					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108807470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9430088B20Rik	RIKEN cDNA 9430088B20 gene			1337 bp upstream
Cpgi17816	CpG island 17816			868 bp distal
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr399823	regulatory region 399823			1872 bp downstream
Rr636214	regulatory region 636214			1825 bp distal
Rr636215	regulatory region 636215			1339 bp distal
Rr636216	regulatory region 636216			1261 bp proximal
Tssr58099	transcription start site region 58099			1992 bp downstream
Tssr58100	transcription start site region 58100			1967 bp downstream
Tssr58101	transcription start site region 58101			1951 bp downstream
Tssr58102	transcription start site region 58102			1944 bp downstream
Tssr58103	transcription start site region 58103			1905 bp downstream
Tssr58104	transcription start site region 58104			1893 bp downstream
Tssr58105	transcription start site region 58105			1788 bp downstream
Tssr58106	transcription start site region 58106			1765 bp downstream
Tssr58107	transcription start site region 58107			1365 bp downstream