rs49464294 SNP Detail

Summary

• ID
  rs49464294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38831172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAGAAAGT GCACATGCTT CACCTCCCAT CCCCCAACCC
  CTGTCCAATA CATTAGGATT AAATAAAAAT GCTTCCTGGC CACTTACAGA AGGAAATGTA
  R
  AGATTACTAT CCACCCTTTT CTTTTATGTG TCCTTGCCTT CAAAGGGCAG ACAGGATCAA
  AATGGAGCAG AGTGGCTGCT TTTGTGGTGG CAGTAATGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134843776	ENSMUSSNP4853812	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320722887	CHEV_3_38675945	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49464294					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38831172 () rs orientation: forward

Symbol	Name	Function Class
Rr575702	regulatory region 575702	within coordinates