rs49462096 SNP Detail

Summary

• ID
  rs49462096
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA GGGCAGCCTG CTTGAAGAGG
  K
  TTACCTGTCC CTAGGACACT GAACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932514	NES16191111	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49462096					SNP	G	G	G	G	G	G	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932514	NES16191111	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149600 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	within coordinates
Rr637289	regulatory region 637289	1227 bp proximal
Rr637290	regulatory region 637290	1412 bp proximal
Rr637291	regulatory region 637291	1463 bp proximal
Tssr58392	transcription start site region 58392	1152 bp downstream
Tssr58393	transcription start site region 58393	1133 bp downstream
Tssr58394	transcription start site region 58394	1093 bp downstream
Tssr58395	transcription start site region 58395	853 bp upstream
Tssr58396	transcription start site region 58396	869 bp upstream
Tssr58397	transcription start site region 58397	907 bp upstream
Tssr58398	transcription start site region 58398	933 bp upstream
Tssr58399	transcription start site region 58399	955 bp upstream
Tssr58400	transcription start site region 58400	983 bp upstream
Tssr58401	transcription start site region 58401	1019 bp upstream
Tssr58402	transcription start site region 58402	1050 bp upstream
Tssr58403	transcription start site region 58403	1068 bp upstream
Tssr58404	transcription start site region 58404	1087 bp upstream
Tssr58405	transcription start site region 58405	1129 bp upstream
Tssr58406	transcription start site region 58406	1159 bp upstream
Tssr58407	transcription start site region 58407	1190 bp upstream
Tssr58408	transcription start site region 58408	1257 bp upstream
Tssr58409	transcription start site region 58409	1279 bp upstream
Tssr58410	transcription start site region 58410	1301 bp upstream
Tssr58411	transcription start site region 58411	1317 bp upstream
Tssr58412	transcription start site region 58412	1344 bp upstream
Tssr58413	transcription start site region 58413	1357 bp upstream
Tssr58414	transcription start site region 58414	1390 bp upstream
Tssr58415	transcription start site region 58415	1405 bp upstream
Tssr58416	transcription start site region 58416	1420 bp upstream
Tssr58417	transcription start site region 58417	1474 bp upstream
Tssr58418	transcription start site region 58418	1507 bp upstream
Tssr58419	transcription start site region 58419	1526 bp upstream
Tssr58420	transcription start site region 58420	1553 bp upstream
Tssr58421	transcription start site region 58421	1572 bp upstream
Tssr58422	transcription start site region 58422	1598 bp upstream
Tssr58423	transcription start site region 58423	1606 bp upstream
Tssr58424	transcription start site region 58424	1668 bp upstream
Tssr58425	transcription start site region 58425	1713 bp upstream
Tssr58426	transcription start site region 58426	1735 bp upstream
Tssr58427	transcription start site region 58427	1762 bp upstream
Tssr58428	transcription start site region 58428	1777 bp upstream
Tssr58429	transcription start site region 58429	1842 bp upstream
Tssr58430	transcription start site region 58430	1887 bp upstream
Tssr58431	transcription start site region 58431	1983 bp upstream
Tssr62617	transcription start site region 62617	917 bp downstream
Tssr62618	transcription start site region 62618	939 bp downstream
Tssr62619	transcription start site region 62619	975 bp downstream
Tssr62620	transcription start site region 62620	1018 bp downstream
Tssr62621	transcription start site region 62621	1084 bp downstream
Tssr62622	transcription start site region 62622	1636 bp downstream
Tssr62623	transcription start site region 62623	1654 bp downstream
Tssr62624	transcription start site region 62624	1769 bp downstream
Tssr62625	transcription start site region 62625	1920 bp downstream