rs49460982 SNP Detail

Summary

• ID
  rs49460982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116837256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTAAGTT CTGCTGCTAC
  TTCAGACAAT ATGGAGCTGC TCCTTACACC TCACAGGAGT CCACAACCTT CACCACCAGG
  CTCCCGCAGA CACTTGCAGA GCCAGTGAGG CTGGTGCCCT CAGACAGCGT TAGTGTTCTC
  TTTCTCTGAT TGGATGCCAT TGATAGTAAT GTCATGACAC ACAGATAACA TGTATCGCAC
  R
  GAACTCTTAC CGATACCATC GTAAATATAA TCTTTGTCAA AACATAATTC TGATTCAGCT
  GTCCCTTGGA AACATGAAAA TTCATTGTTA TGCATTTGAC TGTCCTGTTT CCTGGATTTT
  TGTCCAAAGC CAAGAACTAT AAATTCACCT TTTAAGTCAA TCTCTTTCAT GAACTTACTC
  TCTTAATCTC TCCATTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60435221	NES15935651	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49460982					SNP	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435221	NES15935651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116837256 () rs orientation: forward

Symbol	Name	Function Class
Rr583826	regulatory region 583826	691 bp proximal