rs49457586 SNP Detail

Summary

• ID
  rs49457586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127624634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTAATA TACTGTAGCA
  CTGATGAAGA TATGCATAAG CTATCAGCCG GTGATTCCGT CCCTGGTCCT CTCCTGTACA
  GGTGCAGAGG GGCTATTATC AGAATGCCTA TTAGCGGTAA CAGAAAGAAA GAGAGAAAGA
  ACACACCCAC CCCTGACGTA ACAGAGATGT CCATCAGTAA AGTAACAGTA AATGATGGTA
  Y
  AGTAGTACAA TACAGTGCTA CACAGGAGGC GCATGATCAA GTATGAAAAT GAGAGTTTTG
  GACCAACTAT TCAAAATCAC TGAGAGAAAC AACCAAATGT GTAGACTAAT ATTTACTGTA
  TTTAAAGTAG TTACTGAGGA ACACGAACAC AAATTCTTCC CTTGAATCTA GCCACCATAG
  AAAGCTTGCT TCCAGTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135872339	ENSMUSSNP199782	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320957267	CHEV_3_127533903	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49457586					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127624634 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	424 bp distal
Rr584872	regulatory region 584872	within coordinates