rs49457233 SNP Detail

Summary

• ID
  rs49457233
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152552854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGAGAAA GAGGGGAAGG
  TGGAGCTTAA GGTTTTGGGA GAAAAAGAGG AGGGGACCAC AGAAGAGGAG GAGGAGGAGG
  AGGAAGGAAA GAGGAGCAGA AGCACCTGGC CCGGAGAAAC TGTAAGTTCT AAGGGGTCTC
  TTATATGGGG AAGACCATAG TGTCATGGTA GATCTGCCCA ATCTAGGCGC ACAGCACATG
  K
  ATTCATATTA ACTGAGTTGT GTTTTCATTG CCTGGGCTTA TTTGGATTAG AGATTTACTG
  CAACAGACAT TATTATCCCA TAATTCCGTA ACTCATGACA ATCCGGAAGT AAGAAAGAGG
  CATTGTTTTG CTAATTCGCA TAACAAGTAA TAAGGTCAAG TTATCTCTTC CTTAAACCTT
  ATTGGCTTGC TGGGCTAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145734358	ENSMUSSNP2338079	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49457233					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152552854 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420515	regulatory region 420515	1602 bp distal
Rr420516	regulatory region 420516	433 bp proximal
Rr420517	regulatory region 420517	1536 bp proximal