rs49455308 SNP Detail

Summary

• ID
  rs49455308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31729507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGGGCC AGCAACAAAA
  ATGAATACTA AAGAAATTAA AATTAAAACA AGACAAAAAA AATCTAAAAG TATTTGAGAA
  GGTCCTACAT ATTCTGAATG CCTCCATTTA AAGTTCCTTC CATGTTCCTC TCTGAAATGG
  AACCAAGCCT AGCCTCACAG CTAGGTAACC AGACCTAGAA CTTCAGCGAG TGTGCTATTC
  Y
  CCGGGCTCAC TGCTCAAACC ACAAGTGCTT CCCTGCCATC TCACCCTTTA TCTTCTGGCG
  TGGCCTTCTT CTCTGCAGTA CTGCAGTCGT ATGTGAAGAC ACAGTCATCA TCACTAAAGG
  GAAGAGACAG GAGTGAACAT CTTTCTCTTG GAACAAAAAC ATTCCATCGT CATTACATTA
  TGGGTCTTAG CCATGACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60257947	NES15756545	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49455308					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257947	NES15756545	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31729507 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm50103	predicted gene, 50103			1471 bp upstream
Rr370216	regulatory region 370216			1744 bp upstream
Rr525507	regulatory region 525507			586 bp proximal
Rr525508	regulatory region 525508			981 bp proximal
Rr525509	regulatory region 525509			1830 bp proximal
Tssr147287	transcription start site region 147287			1684 bp downstream
Tssr147288	transcription start site region 147288			1720 bp downstream
Wdr4	WD repeat domain 4			Intron
				Noncoding-Transcript-Variant