rs49454338 SNP Detail

Summary

• ID
  rs49454338
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172460105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCAGCATA GTTGACTTTA GTCAGGGAGT GGGTCCATCT
  AGCTCCCACC CCACTTAGCC CTGTCACCCC CGCCCCCAAC CCCAGGCTCT CCCACTCTTT
  W
  CGGACTCCAG CTCCGGCCCC GCCCACTCAT TTCCTTCCAG GCCCCGCCCT CTCGCTCTGG
  CTCACGAGCG TGCTGACCTC TCCCCGGGCA TTGGCCTCG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013322	PARCsnp_1.20739	PARC_SEQ	INBRED	f	SNP	T	A
ss120015548	PARCsnp_1.10917	PARC_SEQ	INBRED	f	SNP	T	A
ss146197850	ENSMUSSNP4111016	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320126694	CHEV_1_174562669	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs49454338					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172460105 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	Intron
Gm35601	predicted gene, 35601	491 bp upstream
Rr396594	regulatory region 396594	355 bp upstream
Rr423641	regulatory region 423641	within coordinates
Rr423642	regulatory region 423642	220 bp proximal
Rr423643	regulatory region 423643	414 bp proximal
Rr423644	regulatory region 423644	519 bp proximal
Rr423645	regulatory region 423645	1267 bp proximal
Tssr10245	transcription start site region 10245	526 bp upstream
Tssr15247	transcription start site region 15247	253 bp downstream
Tssr15248	transcription start site region 15248	277 bp downstream
Tssr15249	transcription start site region 15249	393 bp downstream