rs49453937 SNP Detail

Summary

• ID
  rs49453937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153364424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACACGT ACCTCTGCAC
  CTGAAACCCT TCATTAACAT CCTCCAGATA ACTCAGAAGT GAGACTCACG TTGCGAGTGA
  ATGCAGTCTA CAGATACGCA AATTCACACC TAAGGGAAGG TCTCAGTGCC CTGCCAACGC
  ATACACTGAA CAGAGGGCAA GGCCACTGTG GCTGTACAAT GGAAGCTGAC AGCAGTCCCC
  R
  CTACATCCAC CACGCCATGG ATGTGGAAGA GAGTAAACAG GCTAACACCT TAGGGATACA
  CTAAGGCAGG TGTGCCTGGG AAGACGGCAG AAAGCAATTA GGGAAGAAGA CCCAACCCAG
  GCTGAGGATG AAGAAACCTC ATGGCCAGCC CTGCTCACAG GTAAGAGTGG GGAGCCTGAT
  GTCTGCCGTC GGCCTTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110555	ENSMUSSNP5866303	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49453937					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153364424 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			within coordinates
Rr587720	regulatory region 587720			194 bp distal
Rr587721	regulatory region 587721			884 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant