rs49450985 SNP Detail

Summary

• ID
  rs49450985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30172421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATAAAAT TATACTACTG
  CTCTCAGATA ACACCTAACA TAGAACATAT GAGAAAAGAG ATTGTTTTTT ACCAGTTGTC
  AAAAAGAAAA CATGGAAAAA TAGAAAATAT TCCAGAAGAC CTGAACTGCT TTAGGGCAAT
  AAAAATGCCA GAAGCGATCA GGAAAGAGTT AGTGAATGAA TACCACAGGC ATAAGGTCAG
  R
  GACAGATCCA GAAGTGACCT GGGAGTACAC CTGACTAGTC AGGAGCAGGG TCAGGGCCCA
  GGGTGCCCTC TTCTCATCAG ACAACTGCAG TGCTAATAAC AGGCCCTGGA TCCAGGCCTG
  GTTCCAGAAT ATTCCAAAAG GTCCAGAAGG TGACTCAAGG AAATAATGTG TCAGTCCTTT
  ATAGTTAGAT AATTCACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134729148	ENSMUSSNP1173962	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49450985					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30172421 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			444 bp proximal