rs49448356 SNP Detail

Summary

• ID
  rs49448356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154095643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTGGCC CGGGACTGCT
  CCAACCCCCA GTACTGGGGA TTGAGCCTTA GGCTGACATG TTTCTACCAA CTGGACTACC
  TCTTGTTGCC TGTCCCAAGG CTTATGTACC TTGAAGACAA ACCTGGGGAC GGGGGCGCTC
  TGGAGCCCTT TATCTTTTTT TCCCCCTTGT TCCAGTATAC CATATTAATT AAATCTTTCT
  Y
  GTTGCCTGTT TTATTATTTT TTAAATATGG TCTCAGTCGC CCAGGTTGAC CTCAAACTTG
  CTATAAAGTC AAGCTCCTTT GTTTGTGTTT TGTTTTGTTT TGTTTTTCGA GACAGGGCTT
  CTCAGTATAG CCCTGGCTGT CCTGGAACTC ACTCTGTAGA CCAGGCTGGC CTCAGAAATC
  CACTTGCCTC TGCCTCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148097206	ENSMUSSNP3695271	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49448356					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154095643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15427	CpG island 15427	214 bp proximal
Lrrc47	leucine rich repeat containing 47	617 bp upstream
Rr606051	regulatory region 606051	78 bp proximal
Tssr40571	transcription start site region 40571	585 bp upstream
Tssr40572	transcription start site region 40572	1095 bp upstream