rs49448331 SNP Detail

Summary

• ID
  rs49448331
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40755397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCGAGCT AACCAGCTCA
  TTAGAGTCCT TAGCCTCCAT CAGGGAGGGA GCTCAGAAAA TCTCTCAGAG CGTCAAGATG
  CCTTCCACCC CAGACACCTG CATCATCGAG GTGTGGCAGC TGCTTGAACC ATGTCTCCTT
  TTCTCTTTGG CCCATTTCAC ATCCCATCCC CTACCCAACT TTCTTACTTT CTAGATCTGC
  S
  ATTCCTCACG TGTAATCCTT AATTTTTTTT TTAAAAGGAC TTTAAGGTTG GAAATCTACT
  CGGTAAAGGA TCATTTGCTG GTGTCTACAG AGCTGAGTCC ATACACACTG GTTTGGAAGT
  TGCAATCAAA ATGGTAAGAA TGTATTAGTT ATTGTTTCTT CAGTATTTTT GCAAGGTACT
  AGAGAGCAAT GAAGGCATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60400510	NES15892877	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49448331					SNP	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400510	NES15892877	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40755397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13112	CpG island 13112			49 bp distal
Plk4	polo like kinase 4			Intron
				Noncoding-Transcript-Variant
Rr575856	regulatory region 575856			1951 bp distal
Rr575858	regulatory region 575858			698 bp distal
Rr575859	regulatory region 575859			832 bp distal
Tssr28972	transcription start site region 28972			912 bp downstream
Tssr28973	transcription start site region 28973			894 bp downstream
Tssr28974	transcription start site region 28974			176 bp downstream