rs49447585 SNP Detail

Summary

• ID
  rs49447585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143630281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGGGAG CTCACCTATC
  CTTGGACAGG CACCAGAGTG TCCTTTCTGT TCAAGGATGT GATGTCATTT AGGAGTTTTT
  CTGTAAAAAG AGACAATGTT TTCATAGTAG ACCCTCAACT AAAAGACTTA ATTGGTGTGC
  CTGAAACCAG CTTCCAGAGA GCCTGAAATG GGAGCATTCA GGGTCAGCCT GGCAACAGAG
  R
  AAGGGTCTGT CTTATTAATG GCAAAAAAGG TGAAAGAACT TAAATGAGAA AGCTGTGATA
  TTGAAACCAA AACACTGTCA TTGAAATTTA ACCATAAATT TGTCTAATTA TAAACATAAC
  TGTTTGAGTG AATTCAATGA GAAGATAAAA CAGAACAGAA GACAGCTGGT TCCTCGGGAG
  CTGTTCTAAT AAAATGAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144601874	ENSMUSSNP3997436	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49447585					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143630281 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	Intron
Rr624267	regulatory region 624267	1517 bp distal
Rr624268	regulatory region 624268	958 bp proximal
Rr624269	regulatory region 624269	1527 bp proximal