rs49444639 SNP Detail

Summary

• ID
  rs49444639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC TAGCCCTGAA GAATCATCCA
  Y
  GCCTCATAAC TTTGAGTTTT AATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147115178	ENSMUSSNP6018608	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320438722	CHEV_2_102388985	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49444639					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	938 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	1184 bp upstream
Rr561703	regulatory region 561703	803 bp proximal
Tssr19094	transcription start site region 19094	1217 bp upstream
Tssr19095	transcription start site region 19095	1271 bp upstream
Tssr19096	transcription start site region 19096	1289 bp upstream
Tssr19097	transcription start site region 19097	1310 bp upstream