rs49442691 SNP Detail

Summary

• ID
  rs49442691
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18818804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGTGGT AGAGGGTTCT
  TTATGTGATC TAGGCTGCTC CAAACTCTCA ATCCTCCTGC ATCAAGCTTT CAACTGCTGT
  GATTACAGGT GTTTACTACC ATGCCCAGCT TTCTTGCCTT TGTTAAGGCT AAATCAAGTT
  TTTCTCGTTC TCATCCCAAC TGTCACATAT ATTCAAGTGT TGTGTAAGCT TGCCCCAAAC
  S
  TTCATCCAAA GCATCTTTTC TGTCTGTCTC CTTTCAAACA ACAGGTCTTA CCTTGAAATC
  TTGAGATAGA AGCTTTATCT ATCACAGTCC AGTCCTAACT TGTTCCAAAT GCTGACCTTT
  TAGTAATATT CTCCAGCCCA TGTATTCTAG GCTATTTTGC AGCATTTCAG ACTTCTACCT
  ACAGACTCTA ATAGCACTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133041749	ENSMUSSNP274983	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49442691					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18818804 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	621 bp proximal
Rr626952	regulatory region 626952	747 bp proximal