rs49441114 SNP Detail

Summary

• ID
  rs49441114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130732170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACTGTGCT CCTGGCAAAC AAGACAAGCT TGGTGACAAG
  TCTGATCCTT GAAGAATTGA TGAAGCCAGA AATATAAACA TTTTTCTTGA ACCATCAGCT
  Y
  ACAATCTTTC CCCCTTACCT CTATTTTCAC CTGCTTTGTT TCTATGTGGC AAAACATCTC
  TACCCAGAAT GCCCCCAAAT CCATCCCCAT ACCAGTTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135902553	ENSMUSSNP6551196	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49441114					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130732170 () rs orientation: forward

Symbol	Name	Function Class
2010110G14Rik	RIKEN cDNA 2010110G14 gene	1184 bp upstream
Gm64594	predicted gene, 64594	1615 bp downstream
Rr367556	regulatory region 367556	1279 bp downstream
Rr585240	regulatory region 585240	1778 bp distal
Rr585241	regulatory region 585241	1231 bp distal
Rr585242	regulatory region 585242	1857 bp proximal
Tssr31681	transcription start site region 31681	1920 bp downstream