rs49438778 SNP Detail

Summary

• ID
  rs49438778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:155235286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCAGTGA TGATAAGTTC
  ACTGAATCTC TGCTGGTTAG TACACAGGCC ACCTGTTCTC AAGACTGCTG ACTCAGCTAC
  CGTGGCACAC AGTAGGAGCT GTTGTGACCA TGCAATCATG GAATAAATAT GCCACAGTAA
  GGGCTTAATG AAAAGCCCCG AGGAAGTACT TGTTAGAAAG GATGATGTTT AAATGGCAGA
  R
  CAACCAGGAA GCCTGGTGTT TGTAAGGGGT GTGCAGTCAA AGTAAAGTTT AGATGCTGAT
  GATTTTCTAT TGACTGTGTT TCAAACCTAA GAGCTCTGAA TTTCAACACA AATTCACATA
  AGATAGTTTT ATTTATACTA CATTAGGCTC TGTTCCACTT CGCTCAAACT GTGACATTAT
  ATTTTCAAAC CCATTGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61103995	NES16605852	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49438778					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61103995	NES16605852	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:155235286 () rs orientation: forward

Symbol	Name	Function Class
Rr375954	regulatory region 375954	1833 bp upstream
Rr587935	regulatory region 587935	1360 bp proximal