rs49438211 SNP Detail

Summary

• ID
  rs49438211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:96594477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGTCAT TGCAACTTAT
  CTGTTATTTA GTTACAGACA TCTCCTCACT GGACACCTTC TTTGTCCCCA ACATAATTCC
  AACTGCTATA AATTAGTCAA TACAGATCCC TGCTTCTCAC TGAGTTTATC TTTTGACACT
  TTTAGTGCTA TTAAGTAACT ATAAAAATAC AATTAAAGCC CCAGCATAAC CTTTGTAGTA
  Y
  ATGCTCAGAG AAATGTTTCT TCTATTTATT TAAACTCTCA CTTGCTTTTT GTTTGTTTTC
  CAAATTCACA CATTATTTCA TAAAGGAACT CAGTGAGTGG TTCCGGGGCA TATATTTACT
  TAACCTTTCT CTGTCATAGA TAGCAGTTAA AAAATATAAG CAAGATTTAC GCCTGTCTTC
  CCAAGCCAAA TAACATCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146981878	ENSMUSSNP3785543	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49438211					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:96594477 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561438	regulatory region 561438	111 bp distal