rs49428855 SNP Detail

Summary

• ID
  rs49428855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137117580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT AAACCTGAAG GGATCGACAG
  Y
  TGGTCCCCAA GTGTGGTTCT CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147604102	ENSMUSSNP126011	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321363492	CHEV_4_136946184	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49428855					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137117580 () rs orientation: forward

Symbol	Name	Function Class
2810405F17Rik	RIKEN cDNA 2810405F17 gene	1541 bp upstream
Cpgi15128	CpG island 15128	1546 bp distal
Gm52681	predicted gene, 52681	within coordinates
Rr377264	regulatory region 377264	938 bp downstream
Rr602608	regulatory region 602608	1764 bp distal
Rr602609	regulatory region 602609	1552 bp distal
Rr602610	regulatory region 602610	1051 bp distal
Rr602611	regulatory region 602611	1228 bp proximal
Tssr1346	transcription start site region 1346	1565 bp downstream
Tssr44123	transcription start site region 44123	1839 bp upstream