rs49425771 SNP Detail

Summary

• ID
  rs49425771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAG TACAGGCCTC CAAACAATTG
  Y
  ACCTCAGGCA GTAGAGCTTG TAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss639937508	FVB_NJ_3_14873841	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	T	T	C	T	T	T	C	C	C	C	T	T	C	C	T	T	C	C	T	T	C	C	C	C	C	C	C	T	C	T	C	C	C	T	C	T	C	C	T	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs49425771					SNP	C	C	C	T	C	C	T	T	C	T	T	T	C	C	C	C	T	T	C	C	T	T	C	C	T	T	C	C	C	C	C	C	C	T	C	T	C	C	C	T	C	T	C	C	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639937508	FVB_NJ_3_14873841	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938901 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1460 bp downstream
Rr374551	regulatory region 374551	1843 bp upstream
Rr397608	regulatory region 397608	561 bp upstream
Rr573714	regulatory region 573714	628 bp proximal
Rr573715	regulatory region 573715	724 bp proximal
Rr573716	regulatory region 573716	1267 bp proximal
Tssr28458	transcription start site region 28458	1810 bp downstream
Tssr28459	transcription start site region 28459	1773 bp downstream
Tssr28460	transcription start site region 28460	1687 bp downstream
Tssr28461	transcription start site region 28461	1631 bp downstream
Tssr28462	transcription start site region 28462	1594 bp downstream
Tssr28463	transcription start site region 28463	1543 bp downstream
Tssr28464	transcription start site region 28464	1502 bp downstream
Tssr28465	transcription start site region 28465	1363 bp downstream
Tssr32654	transcription start site region 32654	1304 bp upstream