rs49425399 SNP Detail

Summary

• ID
  rs49425399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122213813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCAGCTGCGG TGAGGTGAGA GCAGCCCGGC GCTGAACCGC AATCCCGGAC
  Y
  CCGAACGCGG CGCGGGGAGG TGAGTGTGTC CCGTGCGTTC CTGTTCAGCC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135741329	ENSMUSSNP1714702	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320911482	CHEV_3_122123082	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49425399					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122213813 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcar3	breast cancer anti-estrogen resistance 3			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13768	CpG island 13768			within coordinates
Rr397985	regulatory region 397985			282 bp downstream
Rr584325	regulatory region 584325			961 bp distal
Rr584326	regulatory region 584326			376 bp distal
Rr584327	regulatory region 584327			within coordinates
Rr584328	regulatory region 584328			1644 bp proximal
Tssr31494	transcription start site region 31494			410 bp downstream
Tssr31495	transcription start site region 31495			377 bp downstream
Tssr31496	transcription start site region 31496			358 bp downstream
Tssr31497	transcription start site region 31497			292 bp downstream
Tssr31498	transcription start site region 31498			164 bp downstream