rs49424252 SNP Detail

Summary

• ID
  rs49424252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129896486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCACTA GGATGGACTG
  CCATTGATTA ACCCAAGGCC ATTCATACGT CCTCCATAGC TTGTCAAAGC ACAGAACTCT
  ACTTTGAAAG CCATTAACTT TCAGTTTATG CAAGTCATTT AAAAAATATC TTGCTTACCA
  TGTTGCTGAG GAATCAAATC ATTCCTAGAA TTCTTTTTCT TCTAAAAATT TTCTGTTATA
  R
  AGAAATTTAA ATATGTTCAA AGAGGGAATA ACATGAATCT CCTTTTGTCC CCTTTCCTGT
  CTCCACAGCT ATGGACCCAG CCGACAACTT CCTGTATATT CTTCAACTAC TTTGAGTCAA
  AATCCAGAAT CGCACTAGTT TGTGGTAAAT GTCCATCGGG AATCATACTT CTGCTCTTTT
  GTAGGCCATT TGTTGTATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135891756	ENSMUSSNP6963999	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49424252					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129896486 () rs orientation: forward

Symbol	Name	Function Class
Rr585133	regulatory region 585133	521 bp proximal
Rr585134	regulatory region 585134	752 bp proximal
Rr585135	regulatory region 585135	838 bp proximal