rs49424067 SNP Detail

Summary

• ID
  rs49424067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143654438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATGATG CAGGGAACTG
  GGAATGTGGC TGAAGGGAGG CACCCAGACA AGGTCTGCTT TCCTTTGGAG GGCTGTACAT
  AGATAAGGCA AAGAGAATCT CTGGATATCT CAAGCTGGGA CTTTGGGGGA ATTGTTATCG
  TAATCATGTA TGTTGGCATT TTTCCCCTGG ATGTTTCTGG AGCCTTCTCC TGTGGATGCC
  R
  TTTTGACTTC CTTGGTTCTT GCTAAAAGTC CAGAGAGCTT TCTCTGTCTC GCACATTTAA
  TCCTGCACTG GGGTTAGAGA AAGGTGTCCA TGAAAGCAGC ATCAGTAGGC AAAGAATTCT
  AGATATGGAT TCATCTGCTT GAATTTATTA GTGGGGTGAC AGGCAAGGGG TGGTGTAATT
  CTCTGGATGT AGGCTTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136027351	ENSMUSSNP6972073	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49424067					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143654438 () rs orientation: forward

Symbol	Name	Function Class
Rr375845	regulatory region 375845	1817 bp downstream
Rr406686	regulatory region 406686	191 bp distal
Rr586568	regulatory region 586568	526 bp distal
Rr586569	regulatory region 586569	485 bp proximal