rs49421815 SNP Detail

Summary

• ID
  rs49421815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10973823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAATGAA ACCAATTTCA
  AAAATAAAAG ACAGGGTGCT GGCTGGTGAA CTGCTCCTGA TGGTGTAAGA ATCTAGGCTG
  ATCAAGCCGC AAGGAATCAG TGATCTCCCA TGGCCTCTGC TTCAATTCCT GCCTGCAGGT
  TCCTGGCCCA GTGTCCTTTG ATGATAGACT GTGATATGGA AGTGGAAGCG AAATCAATAC
  R
  TTGCTTTTGG TCATGTGCTT TGTCATATCA ATAGAAACCC TAACTGAGGC GCTCACTAAG
  TAAAGAACAT CTCCGCAGCA CACTGTTGCT TCCCCAATAT GGAACTGTCT ATACCACTCT
  AGTTAGAGGA AGCTCTTCTG GATTTTTTCT TAAATTTCAG GGTCTCTGAG CTAGCAGGAT
  GGTTCAGAGG GTAAGAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146010096	ENSMUSSNP4104451	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49421815					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10973823 () rs orientation: forward

Symbol	Name	Function Class
Gm69307	predicted gene, 69307	within coordinates
Rr588838	regulatory region 588838	82 bp distal
Rr588839	regulatory region 588839	within coordinates
Rr588840	regulatory region 588840	61 bp proximal
Rr588841	regulatory region 588841	1581 bp proximal