rs49421220 SNP Detail

Summary

• ID
  rs49421220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150524168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTAGTAC TTTCAGCTGA
  GTTATCCTGA GAAATATTCT TTCCTCTAAA GAAATTAATC AGACAGTAGA TATTTTAAGC
  ACCCTGTGAA GCAGCAAGAA CACTGATTTG TGGATTCTGA GGGCTTCAGT TACATTATTA
  TTTCCACGAG TCACTGGTTA GTTCCATACA CATCAATCCT TTAGACTCTT AAGTATCCAA
  Y
  AGTATCTGAG CAGCAGAAAA GGTAACCATC AAGAACATGT GCTCATATGA GTAATATTCG
  ATAAATTTTA AGTTTTCAAA CATGATTTTA GACACCAGGA TTCCAGTGAT CAACAAGAGC
  AACCTTGAGA TGAACAAAAT CCAATCCATA ATACACTACA CTGTGGCGAT CAGAGTCTGA
  AGTAGGGTAT AGGAATGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61099722	NES16604066	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49421220					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61099722	NES16604066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150524168 () rs orientation: forward

Symbol	Name	Function Class
Rr587375	regulatory region 587375	845 bp proximal