rs49418020 SNP Detail

Summary

• ID
  rs49418020
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27255520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGGGGG ACAGGGCTGT
  GCTCCCCACC CCCACCCTAT GTACCTAGCT TTGAAAACTT GCTGGCACCA AGGAAACCCC
  TGTAAATTCC CTAAGTGAAT AAGTGGGTTA AGAGGCAGGG AGGTCCATCC CCAGAAGCTT
  TGAGTGCAGA GGGCAGGGTG CTAATCCTGC AGAGGAGGTT ACGGCCCTTT CTCAAGCCAG
  S
  CTGCATCCTG CAGGGTCTGC TGGCCAGACT GTTTGCTTTT CCCTGCCTAT CTGTTTCCTT
  CCCATGAAGA ACCTAAGTAG GAAGGGGACA GGGTAAATTG TCCCGGCTTC AGAAAATATA
  AACCTGGAGG TGACAAGGAA GAGAGACATA GACAGTAACA CTGTGCATCC ATTTGTTCAA
  TCAATTTCTG TTAGGCTTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702722	ENSMUSSNP6927550	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49418020					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27255520 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			391 bp proximal