rs49416565 SNP Detail

Summary

• ID
  rs49416565
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114441384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTGAAAGCCT TGGGCTTATT CTACATCCTA ATGTCAATCA
  ATCTGCCAGT GCACCTAAGG CTCCCAAACA ACTGTTTACT GTTCAGTACA TTTTATTCAA
  K
  AATAGTAGCA GAAGTGATCT GCATTTTTAT TTTATGAAAT ATGATAATTC TAGGAATTAT
  TTAAAGATTT TGGTTTTTAG TCTTTCTTAT ATTACATCTA G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss138784448	ENSMUSSNP328728	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49416565					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114441384 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	1243 bp downstream
Tssr3975	transcription start site region 3975	1727 bp downstream
Tssr118082	transcription start site region 118082	1742 bp downstream