rs49416553 SNP Detail

Summary

• ID
  rs49416553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83993191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGTTGT GGTGACCATG
  GCACGGCCAG TTAGGAGATG CTGTCACTCA TCGGGCAGAA GCAGATGCCA GTGGGTGGCA
  TCAGGAGCTT GTGGATGCCC AGGTGGTACC GACATAACAA GTATTCAGAA GAGTGACCTA
  AATTGCAGTT AACTGGCATT TTAGGCTCAA GTAGACTTAA ATGACAGTTC TAAAGTGATC
  R
  GTCACTCCCT TGAATATGAT GGTGGGTTCT GGATATATAT GTATGTGCAC TGCACACCCC
  CAAAAGCATT ACCTGAACCA GGCCGATTCA CTGCTTTCTC TGCTCTGCTG TCCAGGATCC
  CCGGACATTT GGGTGTCATT GGCAATTGGC TCTATGCTAC CTTGCTTACA GGAAGCAGGA
  ATGGGAGTTG TGTTTCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60905574	NES15954376	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49416553					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905574	NES15954376	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83993191 () rs orientation: forward

Symbol	Name	Function Class
Dysf	dysferlin	Intron
Rr632974	regulatory region 632974	497 bp distal
Rr632975	regulatory region 632975	1267 bp proximal
Rr632976	regulatory region 632976	1379 bp proximal